[Biopython-dev] Notification: incoming/7

[Andrew Dalke]

>katel at worldpath.net
> Subject: prosite alphabet too inclusive
[...]
>The alphabet used allows A-Z.  According to:
>
>http://swift.embl-heidelberg.de/7tm/query/userman.html
>
>  J, O and U have no assigned amino acids?


That's my doing.  I was being lenient because I figured if you use
an unusual character then there's probably a reason.  I just
checked against ExPASy's scanprosite, and they explicitly don't
allow J, O or U (or 1, or ~ or chr(15) :).  So I'll fix my code.

Hmm, that means I need to figure out how to login to CVS for write
access.  And just how to I register with Jitterbug?  I don't
see a place to create a new login.

                    Andrew
                    dalke at acm.org