[Bioperl-microarray] SOFT parsers
allenday at ucla.edu
Thu Dec 28 23:14:05 UTC 2006
Replying again to the list from my subscribed address.
I have a parser that does a partial GEO->MAGE-ML transform called
Bio::MageIO, done in classic Bioperl *::IO style. I just checked
CPAN, looks like I haven't published it yet. If you're interested in
developing the library further I can package
it up or put in CVS at open-bio. I've attached a tarball if you want
to peruse first.
There already exist some adapters for serializing MAGE-ML to a
database, so once you have MAGE-ML you will be better off.
On 12/27/06, Michael Muratet US-Huntsville <Michael.Muratet at operon.com> wrote:
> There was a thread a few years ago regarding parsers for SOFT-formatted
> data (the format used by the NCBI/GEO database). Has anybody ever
> developed one that would put the data into a database or into another
> bioperl-microarray mailing list
> bioperl-microarray at lists.open-bio.org
-------------- next part --------------
A non-text attachment was scrubbed...
Size: 2329 bytes
Desc: not available
More information about the bioperl-microarray