[Bioperl-microarray] bioperl-microarray install

[Remo Sanges]

Hi Wei,

I'm not yet using bioperl microarray in my microarray analysis...
but however I'm using it for other stuff...

I gave a look to your problem and it seems to me that you need
to install bioperl-live version in order to get the module
Bio::Expression::FeatureSet that is not present in last stable version 
1.4...

Remo

On Mar 3, 2004, at 7:35 PM, Lu, Wei (NIH/NCI/NCICB) wrote:

> Hi,
> This is Wei, system engineer, from LPG, NCI/NIH. I am trying to install
> bio-microarray over the bioperl, but after successfully "make" the 
> module, I
> got errors on "make test", which showing there is some modules missing 
> as
> the following.  Is there any way I can find these modules?
>
> Thanks for your help in advance,
> Wei Lu
>
>
>
>
> PERL_DL_NONLAZY=1 /usr/bin/perl "-MExtUtils::Command::MM" "-e"
> "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
> t/affy_u133a_cel............Can't locate Bio/Expression/FeatureSet.pm 
> in
> @INC (@INC contains: t . /opt/progs/bioperl-microarray/blib/lib
> /opt/progs/bioperl-microarray/blib/arch
> /usr/local/lib/perl5/5.8.2/sun4-solaris-thread-multi
> /usr/local/lib/perl5/5.8.2
> /usr/local/lib/perl5/site_perl/5.8.2/sun4-solaris-thread-multi
> /usr/local/lib/perl5/site_perl/5.8.2 /usr/local/lib/perl5/site_perl) at
> Bio/Expression/Microarray/Affymetrix/Array.pm line 57.
> BEGIN failed--compilation aborted at
> Bio/Expression/Microarray/Affymetrix/Array.pm line 57.
> Compilation failed in require at t/affy_u133a_cel.t line 32.
> BEGIN failed--compilation aborted at t/affy_u133a_cel.t line 32.
> t/affy_u133a_cel............dubious
>
>         Test returned status 2 (wstat 512, 0x200)
> DIED. FAILED tests 1-39
>         Failed 39/39 tests, 0.00% okay
> t/affy_u133a_stream.........Can't locate Bio/Expression/FeatureSet.pm 
> in
> @INC (@INC contains: t . /opt/progs/bioperl-microarray/blib/lib
> /opt/progs/bioperl-microarray/blib/arch
> /usr/local/lib/perl5/5.8.2/sun4-solaris-thread-multi
> /usr/local/lib/perl5/5.8.2
> /usr/local/lib/perl5/site_perl/5.8.2/sun4-solaris-thread-multi
> /usr/local/lib/perl5/site_perl/5.8.2 /usr/local/lib/perl5/site_perl) at
> Bio/Expression/Microarray/Affymetrix/Array.pm line 57.
> BEGIN failed--compilation aborted at
> Bio/Expression/Microarray/Affymetrix/Array.pm line 57.
> Compilation failed in require at t/affy_u133a_stream.t line 32.
> _______________________________________________
> bioperl-microarray mailing list
> bioperl-microarray at bioperl.org
> http://portal.open-bio.org/mailman/listinfo/bioperl-microarray