[Bioperl-microarray] bioperl-microarray install

Lu, Wei (NIH/NCI/NCICB) luwe at mail.nih.gov
Wed Mar 3 13:41:04 EST 2004


Hi, 
This is Wei, system engineer, from LPG, NCI/NIH. I am trying to install
bio-microarray over the bioperl, but after successfully "make" the module, I
got errors on "make test", which showing there is some modules missing as
the following.  Is there any way I can find these modules?

Thanks for your help in advance,
Wei Lu




PERL_DL_NONLAZY=1 /usr/bin/perl "-MExtUtils::Command::MM" "-e"
"test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/affy_u133a_cel............Can't locate Bio/Expression/FeatureSet.pm in
@INC (@INC contains: t . /opt/progs/bioperl-microarray/blib/lib
/opt/progs/bioperl-microarray/blib/arch
/usr/local/lib/perl5/5.8.2/sun4-solaris-thread-multi
/usr/local/lib/perl5/5.8.2
/usr/local/lib/perl5/site_perl/5.8.2/sun4-solaris-thread-multi
/usr/local/lib/perl5/site_perl/5.8.2 /usr/local/lib/perl5/site_perl) at
Bio/Expression/Microarray/Affymetrix/Array.pm line 57.
BEGIN failed--compilation aborted at
Bio/Expression/Microarray/Affymetrix/Array.pm line 57.
Compilation failed in require at t/affy_u133a_cel.t line 32.
BEGIN failed--compilation aborted at t/affy_u133a_cel.t line 32.
t/affy_u133a_cel............dubious

        Test returned status 2 (wstat 512, 0x200)
DIED. FAILED tests 1-39
        Failed 39/39 tests, 0.00% okay
t/affy_u133a_stream.........Can't locate Bio/Expression/FeatureSet.pm in
@INC (@INC contains: t . /opt/progs/bioperl-microarray/blib/lib
/opt/progs/bioperl-microarray/blib/arch
/usr/local/lib/perl5/5.8.2/sun4-solaris-thread-multi
/usr/local/lib/perl5/5.8.2
/usr/local/lib/perl5/site_perl/5.8.2/sun4-solaris-thread-multi
/usr/local/lib/perl5/site_perl/5.8.2 /usr/local/lib/perl5/site_perl) at
Bio/Expression/Microarray/Affymetrix/Array.pm line 57.
BEGIN failed--compilation aborted at
Bio/Expression/Microarray/Affymetrix/Array.pm line 57.
Compilation failed in require at t/affy_u133a_stream.t line 32.


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