[Bioperl-microarray] Changes to parser modules

[Chris To]

This is a list of the significant "naming changes" recently made to the
bioperl-microarray parser modules

In order to follow MAGE naming conventions and also clean up/clarify some 
of the Bioperl-Microarray modules, 

the following changes were made:
Modules are now all documented! 

Changes to Bio::Expression::Microarray::MicroarrayIO
----------------------------------------------------
Module naming (affymetrix.pm, dchipxls.pm mas50txt.pm) and their
interfaces remain the same. 
However the internals have been modified to reflect changes in the Affy
Array module changes that are 

detailed below.


Changes to Bio::Expression::Microarray::Affymetrix:: modules
------------------------------------------------------------

Array.pm renamed to ArrayDesign.pm

Data.pm renamed to CelArray.pm

Feature.pm unchanged

Mas50Data.pm renamed Mas50TxtArray.pm

dChipXLS.pm renamed dChipArray.pm

IN ALL above modules where appropriate:
Method Changes 
	featureset renamed featuregroup
	each_featureset renamed each_featuregroup
	qc_featureset renamed qc_featuregroup
	each_qcfeaturegroup renamed each_qcfeaturegroup


Send any comments or questions to allenday at ucla.edu and crsto at ucla.edu.