[Bioperl-l] bioperl errors

[liz wright]

As a follow up to my previous message, this gives a bit more information as
to why the make tests failed:

  make test had returned bad status, won't install without force
Failed during this command:
 LDS/AcePerl-1.92.tar.gz                      : make_test NO
 RSAVAGE/GraphViz-2.14.tgz                    : writemakefile NO
'/usr/bin/perl Build.PL --installdirs site' returned status 512
 TODDR/XML-Parser-2.41.tar.gz                 : make NO
 KMACLEOD/libxml-perl-0.08.tar.gz             : make_test NO one dependency
not OK (XML::Parser); additionally test harness failed
 TJMATHER/XML-DOM-1.44.tar.gz                 : make_test NO 2 dependencies
missing (XML::Parser::PerlSAX,XML::Parser); additionally test harness failed
 MIROD/XML-DOM-XPath-0.14.tar.gz              : make_test NO one dependency
not OK (XML::DOM); additionally test harness failed
 BJOERN/XML-SAX-Expat-0.40.tar.gz             : make_test NO one dependency
not OK (XML::Parser); additionally test harness failed
 GRANTM/XML-Simple-2.20.tar.gz                : make_test NO one dependency
not OK (XML::SAX::Expat)
 MKUTTER/SOAP-Lite-0.715.tar.gz               : make_test NO one dependency
not OK (XML::Parser); additionally test harness failed
 MIROD/XML-Twig-3.42.tar.gz                   : make_test NO one dependency
not OK (XML::Parser); additionally test harness failed
 CJFIELDS/BioPerl-1.6.1.tar.gz                : make_test NO 8 dependencies
missing
(Ace,XML::Simple,SOAP::Lite,GraphViz,XML::Parser,XML::Twig,XML::Parser::PerlSAX,XML::DOM::XPath)

On Thu, Mar 21, 2013 at 5:08 PM, liz wright <lzwright at gmail.com> wrote:

> Hi, I just force installed bioperl on ubuntu linux as this approach was
> proposed as a viable alternative when certain tests fail, but I would like
> to check that the fail errors listed below will not significantly impair
> bioperl usage as I am new to all this and don't really know how to
> interpret the error messages.  Thanks, Liz Wright
>
>
>
> * WARNING: Configuration was initially created with Module::Build
>   version '0.38' but we are now using version '0.4003'.
>   If errors occur, you must re-run the Build.PL or Makefile.PL script.
> Will try to install symlinks to /usr/local/bin
>   CJFIELDS/BioPerl-1.6.1.tar.gz
>   sudo ./Build install  -- OK
> Failed during this command:
>  LDS/AcePerl-1.92.tar.gz                      : make_test FAILED but
> failure ignored because 'force' in effect
>  KMACLEOD/libxml-perl-0.08.tar.gz             : make_test FAILED but
> failure ignored because 'force' in effect
>  TJMATHER/XML-DOM-1.44.tar.gz                 : make_test FAILED but
> failure ignored because 'force' in effect
>  MIROD/XML-DOM-XPath-0.14.tar.gz              : make_test FAILED but
> failure ignored because 'force' in effect
>  BJOERN/XML-SAX-Expat-0.40.tar.gz             : make_test FAILED but
> failure ignored because 'force' in effect
>  TODDR/XML-Parser-2.41.tar.gz                 : make NO
>  MKUTTER/SOAP-Lite-0.715.tar.gz               : make_test FAILED but
> failure ignored because 'force' in effect
>  MIROD/XML-Twig-3.42.tar.gz                   : make_test FAILED but
> failure ignored because 'force' in effect
>  CJFIELDS/BioPerl-1.6.1.tar.gz                : make_test FAILED but
> failure ignored because 'force' in effect
>
>
>