[Bioperl-l] Why cannot I get sequences for some entries?

[Fields, Christopher J]

Agreed, definitely file this as a bug.  

chris

On Aug 22, 2013, at 2:45 PM, Jason Stajich <jason.stajich at gmail.com>
 wrote:

> No idea why, but it appears broken though you are right. The genpept tests are still working so I don't know what is wrong - you probably should submit it as a bug.
> 
> On Aug 21, 2013, at 8:06 PM, cacaucenturion2 <cacaucenturion2 at gmail.com> wrote:
> 
> > Hi,
> >  
> > Thanks for your help! I used GenPept but it did not work (also did not work when I was using Bio::DB::GenPept). I am pasting the code as follows.
> >  
> > use Bio::DB::GenPept;
> > $gb = Bio::DB::GenPept->new();
> > $seq = $gb->get_Seq_by_id('162138530');
> > print $seq->seq."\n";
> >  
> > But it would work if I want to get the id of this sequence by typing
> > print $seq->display_id."\n"
> >  
> > 发件人： Jason Stajich
> > 发送时间： 2013-08-23 01:01
> > 收件人： cacaucenturion2
> > 抄送： Bioperl-l
> > 主题： Re: [Bioperl-l] Why cannot I get sequences for some entries?
> > are you using Bio::DB::GenPept as your object since it is a protein ID.
> >  
> > On Aug 19, 2013, at 1:31 AM, cacaucenturion2 <cacaucenturion2 at gmail.com> wrote:
> >  
> > > Hi all, 
> > > 
> > > I tried 
> > > 
> > > my $seq = $gb->get_Seq_by_gi('162138530');
> > >                print $seq->seq."\n";
> > > 
> > > I am sure that the sequence whose GI is 162138530 does exist in the database (http://www.ncbi.nlm.nih.gov/protein/162138543). However, no sequences could be given. Has anyone encountered the similar problem? Thanks.
> > > 
> > > Sincerely yours,
> > > Cacau
> > > 
> > > _______________________________________________
> > > Bioperl-l mailing list
> > > Bioperl-l at lists.open-bio.org
> > > http://lists.open-bio.org/mailman/listinfo/bioperl-l
> >  
> > Jason Stajich
> > jason.stajich at gmail.com
> > jason at bioperl.org
> 
> Jason Stajich
> jason.stajich at gmail.com
> jason at bioperl.org
> 
> 
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