[Bioperl-l] UNIPROT foo.tsv files support

[Fields, Christopher J]

We support Swissprot format.  You'll have to point out where you retrieved the data, TSV isn't listed as a specific file type on their downloads page:

http://www.uniprot.org/downloads

If this is tab-delimited, it should be pretty easy to drum up a custom parser using Text::CSV and the Bioperl FASTA parser.

chris

On Apr 9, 2013, at 2:18 AM, Alexey Morozov <alexeymorozov1991 at gmail.com> wrote:

> Does BioPerl currently support UNIPROT data? For a couple of families I
> have downloaded foo.fasta and foo.tsv files and want to turn data in them
> to Bio::Seq objects, add taxonomy data and do every kind of fancy stuff I
> please.
> It seems that parsing of UNIPROT tsv files is not described on Bioperl wiki
> and search for 'uniprot' at CPAN gives only a couple of modules with
> totally different functions.
> -- 
> Alexey Morozov,
> LIN SB RAS, bioinformatics group.
> Irkutsk, Russia.
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