[Bioperl-l] Has anyone looked at using Perl with Illumina Basespace?

[Alexey Morozov]

Speaking of uncommon sequence fomats, does Bio::Seq or any of
Bio::Seq::Foos support SOLiD colorspace sequences? I implemented basic
stuff like translation to basespace myself and can help writing a module if
it does not already exist.


2013/4/5 Fields, Christopher J <cjfields at illinois.edu>

> (clarify: meaning any Perl/Python/etc interface to it)
>
> Our sequencing facility is looking into testing it out at some point, but
> we have a lot of comp resources locally to process data, so it depends on
> long-term costs.
>
> chris
>
> On Apr 5, 2013, at 9:13 AM, "Fields, Christopher J" <cjfields at illinois.edu>
> wrote:
>
> > Would be the first I have heard of this, but we would be interested in
> this for our seq facility.
> >
> > chris
> >
> > On Apr 5, 2013, at 8:44 AM, Albert Vilella <avilella at gmail.com> wrote:
> >
> >> Hi all,
> >>
> >> Has anyone looked at using Perl with Illumina Basespace?
> >>
> >> I would like to know if there is some work done already before I go and
> >> re-create already existing pieces.
> >>
> >> Looking forward to your responses,
> >>
> >> Albert.
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-- 
Alexey Morozov,
LIN SB RAS, bioinformatics group.
Irkutsk, Russia.