[Bioperl-l] Help connecting to Genbank...?

Damien OHalloran damienmohalloran at yahoo.co.uk
Wed Sep 26 20:55:49 UTC 2012


I'm a newbie trying to to download DNA sequences from Genbank. I used the script below but I get the error "cant locate Bio/SeqIO.pm" - help? 

#!/usr/bin/perl -w
use Bio::SeqIO;
use Bio::DB::GenBank;
$genBank = new Bio::DB::GenBank; 
my $seq = $genBank->get_Seq_by_acc('AF060485');  
my $seqOut = new Bio::SeqIO(-format => 'genbank');
$seqOut->write_seq($seq);



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