[Bioperl-l] Slowness of Bioperl with GFF3 database access
francescomusacchia at gmail.com
Wed Nov 28 10:27:16 UTC 2012
I have a big problem with using GFF3 database with BioPerl. This is not a
question about what is the way to write some bioperl code. I'm experiencing
that when I have to do a lot of accessess on a GFF database (with Bio:DB::SeqFeature::Store)
the slowness increase until my script can stay running for more than a day.
How can I solve it? Or it cannot be done?
Thanks a lot!
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