[Bioperl-l] Slowness of Bioperl with GFF3 database access

Francesco Musacchia francescomusacchia at gmail.com
Wed Nov 28 10:27:16 UTC 2012

Hi all,
I have a big problem with using GFF3 database with BioPerl. This is not a 
question about what is the way to write some bioperl code. I'm experiencing 
that when I have to do a lot of accessess on a GFF database (with Bio:DB::SeqFeature::Store) 
the slowness increase until my script can stay running for more than a day.

How can I solve it? Or it cannot be done?

Thanks a lot!

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