[Bioperl-l] Ask for help about Bioperl

胡江 mooldhu at gmail.com
Tue Nov 6 07:38:57 UTC 2012


hi,
when I use bioperl ,it report errors like this :---------------------
WARNING ---------------------
MSG: sequence '1' doesn't validate, mismatch is )81,95,0(,::
---------------------------------------------------
Error providing evidence type: GeneModel
The error was:

------------- EXCEPTION: Bio::Root::Exception -------------
MSG: Attempting to set the sequence '1' to
[)81hvf95x0(DSTD=qeSrytkiyP::oiV] which does not look healthy
STACK: Error::throw
STACK: Bio::Root::Root::throw /usr/share/perl5/Bio/Root/Root.pm:486
STACK: Bio::PrimarySeq::seq /usr/share/perl5/Bio/PrimarySeq.pm:285
STACK: Bio::PrimarySeq::new /usr/share/perl5/Bio/PrimarySeq.pm:239
STACK: Bio::PrimarySeqI::revcom /usr/share/perl5/Bio/PrimarySeqI.pm:383


but,I am sure that the input file only cotain [ATGCN],I also try to use
another sequences ,but the errors are the same.my bioperl is Bioperl-live
1.006902;

-- 
胡江




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