[Bioperl-l] Common elements within two set of miRNAs

[Giorgio C]

Hi all,  

i have two set of miRNAs from a 454 run. Now my question is how i can
clusterize common elements from the two set ? For "common" i mean sequences
that differ at most by 2 nucleotides ! Is there any tool that can do this
automatically ?  

Thank you 
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