[Bioperl-l] help!
Casandra
kasandrah at gmail.com
Tue Feb 7 16:11:57 UTC 2012
Hi,
I'm trying to install Bioperl but I'm a bit lost. I know I have perl
installed becaused I have already write some scripts but I'm biologist
so... not pretty sure about what messages say.
My perl version:
This is perl, v5.8.8 built for darwin-thread-multi-2level
My computer:
Mac OS X Vesion 10.5.8
I was following this preliminary steps:
--------------
PRELIMINARY PREPARATION
This is optional, but regardless of your subsequent choice of
installation method, it will help to carry out the following steps.
They will increase the likelyhood of installation success
(especially of optional dependencies).
* Upgrade CPAN:
>perl -MCPAN -e shell
cpan>install Bundle::CPAN
cpan>q
* Install/upgrade Module::Build, and make it your preferred
installer:
>cpan
cpan>install Module::Build
cpan>o conf prefer_installer MB
cpan>o conf commit
cpan>q
* Install the expat library by whatever method is
appropriate for your system.
* If your expat library is installed in a non-standard location,
tell CPAN about it:
>cpan
cpan>o conf makepl_arg "EXPATLIBPATH=/non-standard/lib EXPATINCPATH=/
non-standard/include"
cpan>o conf commit
--------------
And I think I did "Upgrade CPAN properly" but when I tried the next
one it started asking too many things to me, and finally it stopped
due to "some problems". In text file you can see the whole process.
What did I do wrong?
After solving these preliminary steps, what should I do? What
exactly .tar or .whatever should I download to install?
I don't see the difference between installing it through "built.PL"
or CPAN. And I don't know if I should do this or that "Fink*" stuff
for MAC.
* I went to Fink webpage and what I expected to see was "hello!
download Bioperl simply clicking here!" but far from this, what it
seems is that first I have to download some kinf of Fink-program
before starting with Bioperl... is it something close to this?
I'm sorry, too many questions... But I really want to learn to use
Bioperl but I have no people to ask it face to face.
Thank you so much,
Casandra
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