[Bioperl-l] install Bio::DB::BigWig ?
Lincoln Stein
lincoln.stein at gmail.com
Tue Mar 29 13:59:22 UTC 2011
I'll release a new version with a fixed Build.PL and README today.
Lincoln
On Tue, Mar 29, 2011 at 4:57 AM, Dan Bolser <dan.bolser at gmail.com> wrote:
> On 28 March 2011 22:26, Lincoln Stein <lincoln.stein at gmail.com> wrote:
> > Hi Dan,
> > There are two problems that I can see. One is a series of compiler
> warnings
> > when compiling the Perl .XS interface file. These are likely nothing to
> > worry about, but I should fix them. What versions of Perl and gcc do you
> > have installed? I don't see them when I compile on my system.
>
> gcc --version # gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-48)
> perl --version # v5.8.8 built for i386-linux-thread-multi
>
> uname -a # Linux cricket 2.6.18-194.32.1.el5PAE #1 SMP Wed Jan 5
> 18:43:13 EST 2011 i686 i686 i386 GNU/Linux
>
>
>
> I got kent from git and built it with the following commands:
>
> cd kent/src/lib/
> echo $MACHTYPE # i686-redhat-linux-gnu
> export MACHTYPE=i686
> make
> cd ../
> export KENT_SRC=`pwd`
>
> # NOTE, both $MACHTYPE and $KENT_SRC should be defined here
> cpan -i Bio::DB::BigWig # FAILS AS DESCRIBED
>
> cd /tmp
> wget
> http://search.cpan.org/CPAN/authors/id/L/LD/LDS/Bio-BigFile-1.05.tar.gz
> tar zxfv Bio-BigFile-1.05.tar.gz
> cd Bio-BigFile-1.05
> # PATCH Build.PL AS DESCRIBED (add -lssl after -lz)
> perl Build.PL
> ./Build # SEE WARNINGS AS BEFORE
> ./Build test # Files=5, Tests=135, Result: PASS
> ./Build install
>
>
> Note, above I didn't patch kent to include -fPIC as suggested
> previously. I don't see any noticeable difference if I do on this
> arch.
>
> It would be good if the instructions above could make it into the
> Bio::DB::BigWig README, as a few people have expressed confusion about
> the exact steps (the README in kent is a bit confusing, and mostly
> unnecessary for the purposes of building Bio::DB::BigWig).
>
>
> > The second issue is that the SSL library is not being linked in.
> Previously
> > there was no dependency on SSL, but Jim may recently have added this to
> the
> > BigWig library in order to allow it to read bigwig files from https
> servers.
> > I see that you added a -lssl to Build.PL; does this make the tests work
> > again?
>
> Yup, when I add -lssl to Build.PL (as per the previous diff), the
> tests pass, but I still see the warnings.
>
> I'm sure I saw the warnings disappear when I was playing with
> different versions of Bio::DB::BigWig, but now they occur without
> fail... if you pardon the pun.
>
> I have a seeking suspicion that it's related to my perl 'build kit'...
> However, since I'm not sure what module versions to report, and since
> you promised to fix these issues anyway, I won't dig into it.
>
>
> Thanks for help, and thanks for the support on
> irc://irc.freenode.net/#bioperl, without which I would have probably
> give up!
>
> Cheers,
> Dan.
>
> > Lincoln
> >
> > On Sun, Mar 27, 2011 at 2:00 PM, Dan Bolser <dan.bolser at gmail.com>
> wrote:
> >>
> >> Hello,
> >>
> >> I'm trying to get Bio::DB::BigWig installed again, this time on a
> >> different box.
> >>
> >> I installed kent from git as described here:
> >> http://genome.ucsc.edu/admin/git.html
> >>
> >>
> >> I made the following changes, similar to those described previously:
> >>
> >> git diff
> >> diff --git a/src/inc/common.mk b/src/inc/common.mk
> >> index c7fc557..5187901 100644
> >> --- a/src/inc/common.mk
> >> +++ b/src/inc/common.mk
> >> @@ -3,7 +3,7 @@ CC=gcc
> >> ifeq (${COPT},)
> >> COPT=-O -g
> >> endif
> >> -CFLAGS=
> >> +CFLAGS=-fPIC
> >> HG_DEFS=-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE
> >> -DMACHTYPE_${MACHTYPE}
> >> HG_INC=-I../inc -I../../inc -I../../../inc -I../../../../inc
> >> -I../../../../../inc
> >>
> >> diff --git a/src/utils/bedRemoveOverlap/bedRemoveOverlap.c
> >> b/src/utils/bedRemoveOverlap/bedRemoveOverlap.c
> >> index fa2292b..acb97d2 100644
> >> --- a/src/utils/bedRemoveOverlap/bedRemoveOverlap.c
> >> +++ b/src/utils/bedRemoveOverlap/bedRemoveOverlap.c
> >> @@ -68,7 +68,7 @@ while (lineFileNext(lf, &line, &lineSize))
> >> /* Parse current line. */
> >> wordCount = chopLine(line, row);
> >> if (wordCount == ArraySize(row))
> >> - errAbort("Too many fields (%d max is %lu) line %d of %s",
> >> wordCount, ArraySize(row),
> >> + errAbort("Too many fields (%d max is %u) line %d of %s",
> >> wordCount, ArraySize(row),
> >> lf->lineIx, lf->fileName);
> >> char *chrom = row[0];
> >> unsigned int start = lineFileNeedNum(lf, row, 1);
> >>
> >>
> >> After setting MACHTYPE=i686, MYSQLLIBS=/usr/lib/mysql/libmysqlclient.a
> >> -lz, and MYSQLINC=/usr/include/mysql, everything seemed to build
> >> correctly after typing 'make' in kent/src (should I be building it
> >> differently?)
> >>
> >>
> >>
> >> Now when I try to install Bio::DB::BigWig via cpan, things look like
> this:
> >>
> >> cpan
> >>
> >> cpan shell -- CPAN exploration and modules installation (v1.9600)
> >> Enter 'h' for help.
> >>
> >> cpan[1]> install Bio::DB::BigWig
> >> CPAN: Storable loaded ok (v2.25)
> >> Going to read '/homes/dbolser/.cpan/Metadata'
> >> Database was generated on Sun, 27 Mar 2011 01:38:43 GMT
> >> Running install for module 'Bio::DB::BigWig'
> >> Running make for L/LD/LDS/Bio-BigFile-1.05.tar.gz
> >> CPAN: Digest::SHA loaded ok (v5.61)
> >> CPAN: Compress::Zlib loaded ok (v2.03)
> >> Checksum for
> >> /homes/dbolser/.cpan/sources/authors/id/L/LD/LDS/Bio-BigFile-1.05.tar.gz
> >> ok
> >> CPAN: Archive::Tar loaded ok (v1.76)
> >> Bio-BigFile-1.05
> >> Bio-BigFile-1.05/Changes
> >> Bio-BigFile-1.05/LICENSE
> >> Bio-BigFile-1.05/DISCLAIMER
> >> Bio-BigFile-1.05/Build.PL
> >> Bio-BigFile-1.05/typemap
> >> Bio-BigFile-1.05/META.yml
> >> Bio-BigFile-1.05/README
> >> Bio-BigFile-1.05/MANIFEST
> >> Bio-BigFile-1.05/ExampleData
> >> Bio-BigFile-1.05/ExampleData/dpy-27-variable.bw
> >> Bio-BigFile-1.05/ExampleData/hg18.chrom.sizes
> >> Bio-BigFile-1.05/ExampleData/refSeqTest.flat.bb
> >> Bio-BigFile-1.05/ExampleData/WS180.chrom.sizes
> >> Bio-BigFile-1.05/ExampleData/refSeqTest.flat.bed
> >> Bio-BigFile-1.05/ExampleData/refSeqTest.as
> >> Bio-BigFile-1.05/ExampleData/dpy-27-variable-trunk.wig.gz
> >> Bio-BigFile-1.05/bin
> >> Bio-BigFile-1.05/bin/bigWigToWig.pl
> >> Bio-BigFile-1.05/bin/wigToBigWig.pl
> >> Bio-BigFile-1.05/bin/index_bigwigset.pl
> >> Bio-BigFile-1.05/lib
> >> Bio-BigFile-1.05/lib/Bio
> >> Bio-BigFile-1.05/lib/Bio/DB
> >> Bio-BigFile-1.05/lib/Bio/DB/BigFile.pm
> >> Bio-BigFile-1.05/lib/Bio/DB/BigWigSet.pm
> >> Bio-BigFile-1.05/lib/Bio/DB/BigFile.xs
> >> Bio-BigFile-1.05/lib/Bio/DB/BigBed.pm
> >> Bio-BigFile-1.05/lib/Bio/DB/BigWig.pm
> >> Bio-BigFile-1.05/lib/Bio/DB/BigFile
> >> Bio-BigFile-1.05/lib/Bio/DB/BigFile/Iterators.pm
> >> Bio-BigFile-1.05/lib/Bio/DB/BigFile/Constants.pm
> >> Bio-BigFile-1.05/t
> >> Bio-BigFile-1.05/t/02.bigbed.t
> >> Bio-BigFile-1.05/t/03.bigwig_high.t
> >> Bio-BigFile-1.05/t/04.bigbed_high.t
> >> Bio-BigFile-1.05/t/05.bigwig_set.t
> >> /bin/tar: Read 9216 bytes from -
> >> Bio-BigFile-1.05/t/01.bigwig.t
> >> Bio-BigFile-1.05/patches
> >> Bio-BigFile-1.05/patches/kent_src_patch_macosx.diff
> >> CPAN: File::Temp loaded ok (v0.22)
> >> CPAN: Parse::CPAN::Meta loaded ok (v1.4401)
> >> CPAN: CPAN::Meta loaded ok (v2.110580)
> >> CPAN: Module::CoreList loaded ok (v2.46)
> >> CPAN: Time::HiRes loaded ok (v1.9717)
> >>
> >> CPAN.pm: Going to build L/LD/LDS/Bio-BigFile-1.05.tar.gz
> >>
> >>
> >> This module requires the compiled jkweb.a library from Jim Kent's source
> >> tree.
> >> If you haven't already done so, please download the source from
> >> http://hgdownload.cse.ucsc.edu/admin/jksrc.zip, unpack it, and build
> the
> >> contents of the "kent/src/lib" subdirectory as directed in the README.
> >> Then
> >> enter the location of the "kent/src" subdirectory at the prompt below.
> >> To prevent
> >> this message from appearing in the future, set the environment
> >> variable KENT_SRC
> >> to point to the "kent/src" subdirectory.
> >>
> >> Please enter the location of Kent source tree:
> >> /homes/dbolser/build/src/kent/src
> >>
> >> Created MYMETA.yml and MYMETA.json
> >> Creating new 'Build' script for 'Bio-BigFile' version '1.05'
> >> Building Bio-BigFile
> >> gcc -I/homes/dbolser/build/src/kent/src/inc
> >> -I/usr/lib/perl5/5.8.8/i386-linux-thread-multi/CORE
> >> -DXS_VERSION="1.05" -DVERSION="1.05" -fPIC -Wformat=0 -DMACHTYPE_i686
> >> -c -D_REENTRANT -D_GNU_SOURCE -fno-strict-aliasing -pipe
> >> -Wdeclaration-after-statement -I/usr/local/include -D_LARGEFILE_SOURCE
> >> -D_FILE_OFFSET_BITS=64 -I/usr/include/gdbm -O2 -g -pipe -Wall
> >> -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
> >> --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
> >> -fasynchronous-unwind-tables -o lib/Bio/DB/BigFile.o
> >> lib/Bio/DB/BigFile.c
> >> lib/Bio/DB/BigFile.xs: In function
> >> ‘XS_Bio__DB__bbiFile_bigWigIntervalQuery’:
> >> lib/Bio/DB/BigFile.xs:172: warning: operation on ‘list’ may be undefined
> >> lib/Bio/DB/BigFile.xs: In function
> >> ‘XS_Bio__DB__bbiFile_bigWigSummaryArray’:
> >> lib/Bio/DB/BigFile.xs:193: warning: operation on ‘values’ may be
> undefined
> >> lib/Bio/DB/BigFile.xs: In function
> >> ‘XS_Bio__DB__bbiFile_bigBedSummaryArray’:
> >> lib/Bio/DB/BigFile.xs:252: warning: operation on ‘values’ may be
> undefined
> >> lib/Bio/DB/BigFile.xs: In function ‘XS_Bio__DB__bbiFile_bigWigSummary’:
> >> lib/Bio/DB/BigFile.xs:296: warning: operation on ‘summary’ may be
> >> undefined
> >> lib/Bio/DB/BigFile.xs:302: warning: operation on ‘summaryList’ may be
> >> undefined
> >> lib/Bio/DB/BigFile.xs:290: warning: unused variable ‘i’
> >> lib/Bio/DB/BigFile.xs: In function ‘XS_Bio__DB__bbiFile_bigBedSummary’:
> >> lib/Bio/DB/BigFile.xs:326: warning: operation on ‘summary’ may be
> >> undefined
> >> lib/Bio/DB/BigFile.xs:332: warning: operation on ‘summaryList’ may be
> >> undefined
> >> lib/Bio/DB/BigFile.xs:320: warning: unused variable ‘i’
> >> lib/Bio/DB/BigFile.xs: In function
> >> ‘XS_Bio__DB__bbiFile_bigWigSummaryArrayExtended’:
> >> lib/Bio/DB/BigFile.xs:358: warning: operation on ‘summary’ may be
> >> undefined
> >> lib/Bio/DB/BigFile.xs:354: warning: unused variable ‘summaryList’
> >> lib/Bio/DB/BigFile.xs: In function
> >> ‘XS_Bio__DB__bbiFile_bigBedSummaryArrayExtended’:
> >> lib/Bio/DB/BigFile.xs:395: warning: operation on ‘summary’ may be
> >> undefined
> >> lib/Bio/DB/BigFile.xs:391: warning: unused variable ‘summaryList’
> >> lib/Bio/DB/BigFile.xs: In function ‘XS_Bio__DB__bbiFile_chromList’:
> >> lib/Bio/DB/BigFile.xs:424: warning: operation on ‘RETVAL’ may be
> undefined
> >> lib/Bio/DB/BigFile.xs: In function
> >> ‘XS_Bio__DB__bbiFile_bigBedIntervalQuery’:
> >> lib/Bio/DB/BigFile.xs:450: warning: operation on ‘list’ may be undefined
> >>
> >>
> ExtUtils::Mkbootstrap::Mkbootstrap('blib/arch/auto/Bio/DB/BigFile/BigFile.bs')
> >> gcc -shared -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions
> >> -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i386
> >> -mtune=generic -fasynchronous-unwind-tables -L/usr/local/lib -o
> >> blib/arch/auto/Bio/DB/BigFile/BigFile.so lib/Bio/DB/BigFile.o
> >> /homes/dbolser/build/src/kent/src/lib/i686/jkweb.a -lz
> >> LDS/Bio-BigFile-1.05.tar.gz
> >> ./Build -- OK
> >> CPAN: YAML loaded ok (v0.72)
> >> Running Build test
> >> t/01.bigwig.t ....... Can't load
> >>
> >>
> '/homes/dbolser/.cpan/build/Bio-BigFile-1.05-RcWq8X/t/../blib/arch/auto/Bio/DB/BigFile/BigFile.so'
> >> for module Bio::DB::BigFile:
> >>
> >>
> /homes/dbolser/.cpan/build/Bio-BigFile-1.05-RcWq8X/t/../blib/arch/auto/Bio/DB/BigFile/BigFile.so:
> >> undefined symbol: SSL_library_init at
> >> /usr/lib/perl5/5.8.8/i386-linux-thread-multi/DynaLoader.pm line 230.
> >> at t/01.bigwig.t line 28
> >> Compilation failed in require at t/01.bigwig.t line 28.
> >> BEGIN failed--compilation aborted at t/01.bigwig.t line 28.
> >> t/01.bigwig.t ....... Dubious, test returned 2 (wstat 512, 0x200)
> >> Failed 29/29 subtests
> >> t/02.bigbed.t ....... Can't load
> >>
> >>
> '/homes/dbolser/.cpan/build/Bio-BigFile-1.05-RcWq8X/t/../blib/arch/auto/Bio/DB/BigFile/BigFile.so'
> >> for module Bio::DB::BigFile:
> >>
> >>
> /homes/dbolser/.cpan/build/Bio-BigFile-1.05-RcWq8X/t/../blib/arch/auto/Bio/DB/BigFile/BigFile.so:
> >> undefined symbol: SSL_library_init at
> >> /usr/lib/perl5/5.8.8/i386-linux-thread-multi/DynaLoader.pm line 230.
> >> at t/02.bigbed.t line 28
> >> Compilation failed in require at t/02.bigbed.t line 28.
> >> BEGIN failed--compilation aborted at t/02.bigbed.t line 28.
> >> t/02.bigbed.t ....... Dubious, test returned 2 (wstat 512, 0x200)
> >> Failed 15/15 subtests
> >> t/03.bigwig_high.t .. Can't load
> >>
> >>
> '/homes/dbolser/.cpan/build/Bio-BigFile-1.05-RcWq8X/t/../blib/arch/auto/Bio/DB/BigFile/BigFile.so'
> >> for module Bio::DB::BigFile:
> >>
> >>
> /homes/dbolser/.cpan/build/Bio-BigFile-1.05-RcWq8X/t/../blib/arch/auto/Bio/DB/BigFile/BigFile.so:
> >> undefined symbol: SSL_library_init at
> >> /usr/lib/perl5/5.8.8/i386-linux-thread-multi/DynaLoader.pm line 230.
> >> at
> >>
> /homes/dbolser/.cpan/build/Bio-BigFile-1.05-RcWq8X/t/../lib/Bio/DB/BigWig.pm
> >> line 7
> >> Compilation failed in require at
> >>
> >>
> /homes/dbolser/.cpan/build/Bio-BigFile-1.05-RcWq8X/t/../lib/Bio/DB/BigWig.pm
> >> line 7.
> >> BEGIN failed--compilation aborted at
> >>
> >>
> /homes/dbolser/.cpan/build/Bio-BigFile-1.05-RcWq8X/t/../lib/Bio/DB/BigWig.pm
> >> line 7.
> >> Compilation failed in require at t/03.bigwig_high.t line 28.
> >> BEGIN failed--compilation aborted at t/03.bigwig_high.t line 28.
> >> t/03.bigwig_high.t .. Dubious, test returned 2 (wstat 512, 0x200)
> >> Failed 32/32 subtests
> >> t/04.bigbed_high.t .. Can't load
> >>
> >>
> '/homes/dbolser/.cpan/build/Bio-BigFile-1.05-RcWq8X/t/../blib/arch/auto/Bio/DB/BigFile/BigFile.so'
> >> for module Bio::DB::BigFile:
> >>
> >>
> /homes/dbolser/.cpan/build/Bio-BigFile-1.05-RcWq8X/t/../blib/arch/auto/Bio/DB/BigFile/BigFile.so:
> >> undefined symbol: SSL_library_init at
> >> /usr/lib/perl5/5.8.8/i386-linux-thread-multi/DynaLoader.pm line 230.
> >> at
> >>
> /homes/dbolser/.cpan/build/Bio-BigFile-1.05-RcWq8X/t/../lib/Bio/DB/BigWig.pm
> >> line 7
> >> Compilation failed in require at
> >>
> >>
> /homes/dbolser/.cpan/build/Bio-BigFile-1.05-RcWq8X/t/../lib/Bio/DB/BigWig.pm
> >> line 7.
> >> BEGIN failed--compilation aborted at
> >>
> >>
> /homes/dbolser/.cpan/build/Bio-BigFile-1.05-RcWq8X/t/../lib/Bio/DB/BigWig.pm
> >> line 7.
> >> Compilation failed in require at
> >>
> >>
> /homes/dbolser/.cpan/build/Bio-BigFile-1.05-RcWq8X/t/../lib/Bio/DB/BigBed.pm
> >> line 7.
> >> BEGIN failed--compilation aborted at
> >>
> >>
> /homes/dbolser/.cpan/build/Bio-BigFile-1.05-RcWq8X/t/../lib/Bio/DB/BigBed.pm
> >> line 7.
> >> Compilation failed in require at t/04.bigbed_high.t line 28.
> >> BEGIN failed--compilation aborted at t/04.bigbed_high.t line 28.
> >> t/04.bigbed_high.t .. Dubious, test returned 2 (wstat 512, 0x200)
> >> Failed 35/35 subtests
> >> t/05.bigwig_set.t ... Can't load
> >>
> >>
> '/homes/dbolser/.cpan/build/Bio-BigFile-1.05-RcWq8X/t/../blib/arch/auto/Bio/DB/BigFile/BigFile.so'
> >> for module Bio::DB::BigFile:
> >>
> >>
> /homes/dbolser/.cpan/build/Bio-BigFile-1.05-RcWq8X/t/../blib/arch/auto/Bio/DB/BigFile/BigFile.so:
> >> undefined symbol: SSL_library_init at
> >> /usr/lib/perl5/5.8.8/i386-linux-thread-multi/DynaLoader.pm line 230.
> >> at
> >>
> /homes/dbolser/.cpan/build/Bio-BigFile-1.05-RcWq8X/t/../lib/Bio/DB/BigWig.pm
> >> line 7
> >> Compilation failed in require at
> >>
> >>
> /homes/dbolser/.cpan/build/Bio-BigFile-1.05-RcWq8X/t/../lib/Bio/DB/BigWig.pm
> >> line 7.
> >> BEGIN failed--compilation aborted at
> >>
> >>
> /homes/dbolser/.cpan/build/Bio-BigFile-1.05-RcWq8X/t/../lib/Bio/DB/BigWig.pm
> >> line 7.
> >> Compilation failed in require at
> >>
> >>
> /homes/dbolser/.cpan/build/Bio-BigFile-1.05-RcWq8X/t/../lib/Bio/DB/BigWigSet.pm
> >> line 177.
> >> BEGIN failed--compilation aborted at
> >>
> >>
> /homes/dbolser/.cpan/build/Bio-BigFile-1.05-RcWq8X/t/../lib/Bio/DB/BigWigSet.pm
> >> line 177.
> >> Compilation failed in require at t/05.bigwig_set.t line 19.
> >> BEGIN failed--compilation aborted at t/05.bigwig_set.t line 19.
> >> t/05.bigwig_set.t ... Dubious, test returned 2 (wstat 512, 0x200)
> >> No subtests run
> >>
> >> Test Summary Report
> >> -------------------
> >> t/01.bigwig.t (Wstat: 512 Tests: 0 Failed: 0)
> >> Non-zero exit status: 2
> >> Parse errors: Bad plan. You planned 29 tests but ran 0.
> >> t/02.bigbed.t (Wstat: 512 Tests: 0 Failed: 0)
> >> Non-zero exit status: 2
> >> Parse errors: Bad plan. You planned 15 tests but ran 0.
> >> t/03.bigwig_high.t (Wstat: 512 Tests: 0 Failed: 0)
> >> Non-zero exit status: 2
> >> Parse errors: Bad plan. You planned 32 tests but ran 0.
> >> t/04.bigbed_high.t (Wstat: 512 Tests: 0 Failed: 0)
> >> Non-zero exit status: 2
> >> Parse errors: Bad plan. You planned 35 tests but ran 0.
> >> t/05.bigwig_set.t (Wstat: 512 Tests: 0 Failed: 0)
> >> Non-zero exit status: 2
> >> Parse errors: No plan found in TAP output
> >> Files=5, Tests=0, 1 wallclock secs ( 0.04 usr 0.01 sys + 0.93 cusr
> >> 0.11 csys = 1.09 CPU)
> >> Result: FAIL
> >> Failed 5/5 test programs. 0/0 subtests failed.
> >> LDS/Bio-BigFile-1.05.tar.gz
> >> ./Build test -- NOT OK
> >> //hint// to see the cpan-testers results for installing this module,
> try:
> >> reports LDS/Bio-BigFile-1.05.tar.gz
> >> Running Build install
> >> make test had returned bad status, won't install without force
> >> Failed during this command:
> >> LDS/Bio-BigFile-1.05.tar.gz : make_test NO
> >>
> >> cpan[2]>
> >>
> >>
> >>
> >>
> >>
> >>
> >> Any hints?
> >>
> >> Cheers,
> >> Dan.
> >>
> >> _______________________________________________
> >> Bioperl-l mailing list
> >> Bioperl-l at lists.open-bio.org
> >> http://lists.open-bio.org/mailman/listinfo/bioperl-l
> >
> >
> >
> > --
> > Lincoln D. Stein
> > Director, Informatics and Biocomputing Platform
> > Ontario Institute for Cancer Research
> > 101 College St., Suite 800
> > Toronto, ON, Canada M5G0A3
> > 416 673-8514
> > Assistant: Renata Musa <Renata.Musa at oicr.on.ca>
> >
>
--
Lincoln D. Stein
Director, Informatics and Biocomputing Platform
Ontario Institute for Cancer Research
101 College St., Suite 800
Toronto, ON, Canada M5G0A3
416 673-8514
Assistant: Renata Musa <Renata.Musa at oicr.on.ca>
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