[Bioperl-l] CDS complement statements from GenBank

[Jason Stajich]

they won't be split locations they will be Bio::Location::Simple 
locations then - I don't understand if that is causing you problems?



Galeb Abu-Ali wrote:
> Hi,
>
> I'm trying to parse CDS complement statements from GenBank files of
> bacterial genomes. I know it works for 'join' statements with
> Bio::Location::SplitLocationI, but there is no spliced genes in
> bacterial annotations and therefore no 'join()' statements. When I
> replace 'complement' with 'join' in the bacterial GenBank file,
> Bio::Location::SplitLocationI gets the coordinates. I took a look at
> SplitLocationI.pm and Split.pm to see if I could replace 'join' with
> 'complement' to get it to work but no luck. At your convenience,
> please advise.
>
> cheers,
>
> galeb
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-- 
Jason Stajich
jason at bioperl.org
http://bioperl.org/wiki