[Bioperl-l] From Blast hits to Taxanomy lineage for Short DNA Sequences (reads)
Ian Mc Dowell
ian.mcdowell at gmail.com
Thu Mar 10 17:11:50 UTC 2011
I would like to take local blast hit sequences, i.e. hsp_hseq, and extract
the full sequences of those hits from the original fasta file and put them
in a fasta file of all hits that I can use later.
This should be a widely performed task but I can't find any scripts that
directly address this issue. I have not acquired the skills to make my own
scripts for this task.
Thanks so much if you have anything that can help me out,
University of Rhode Island
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