[Bioperl-l] bio::Db::sam bioperl version

[Scott Cain]

Hi Maria,

I have no idea of the version of perl is an issue, but I would more
likely expect versions of either Bio::DB::Sam or BioPerl are
different.  If you are running BioPerl from a git checkout for
example, it could easily vary between the two servers.  In past
experience with people having similar problems with GBrowse, that is
usually what the problem is.

Scott


On Mon, Feb 21, 2011 at 3:25 PM, Maria elena Sana <snamln at unife.it> wrote:
> Hi All,
> I'm using a perl script with Bioperl /Bio:DB::Sam object but it runs
> differently on two server on which there are two different perl
> version (5.8.8 and 5.10.1 respectively). On the first machine on which
> there is the 5.8.8 perl version, the script runs correctly, on the
> second it doesn't return errors but doesn't work perfectly. Any
> elucidation?
> I have specifically problem with calculation of query position in pileup
> routine (Bio::DB::Bam::PILEUP)
> Thanx a lot
>
> --
> Dott.ssa Maria Elena Sana
> Università di Ferrara
> Dipartimento di Morfologia ed Embriologia
> Via Fossato di Mortara, 70
> (Viale Eliporto presso CUBO)
> 44121 - Ferrara
> Italy Phone 0532-455851
> Mail mariaelena.sana at unife.it
>
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-- 
------------------------------------------------------------------------
Scott Cain, Ph. D.                                   scott at scottcain dot net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research