[Bioperl-l] about git and perl5lib
Dimitar Kenanov
dimitark at bii.a-star.edu.sg
Fri Oct 29 08:29:53 UTC 2010
Hi guys,
i am sorry if this sounds stupid but i have problem with the PERL5LIB
and the GIT version of BioPerl(BP). I downloaded the BP-live and BP-run
from git. I use Slackware so I added the following line in bashrc:
export
PERL5LIB=$HOME/Bioperl_git/bioperl-live:$HOME/Bioperl_git/bioperl-run:$PERL5LIB
But when i start a script using StandAloneBlastPlus i see perl cant find it:
Can't locate Bio/Tools/Run/StandAloneBlastPlus.pm in @INC (@INC
contains: /home/domine/Bioperl_git/bioperl-live
/home/domine/Bioperl_git/bioperl-run
/usr/lib64/perl5/5.10.1/x86_64-linux-thread-multi
/usr/lib64/perl5/5.10.1
/usr/lib64/perl5/site_perl/5.10.1/x86_64-linux-thread-multi
/usr/lib64/perl5/site_perl/5.10.1 /usr/lib64/perl5/site_perl
/usr/lib64/perl5/vendor_perl/5.10.1/x86_64-linux-thread-multi
/usr/lib64/perl5/vendor_perl/5.10.1 /usr/lib64/perl5/vendor_perl
It seems Perl should find the module but it doesnt. Any idea where i
could have made a mistake?
Btw with: perl -MBio::Perl -le 'print Bio::Perl->VERSION;' i get 1.0069
Thank you
Dimitar
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