[Bioperl-l] treeio->write_tree problem
Jim Hu
jimhu at tamu.edu
Wed Oct 20 15:27:08 UTC 2010
Help! In the script below, I'm not getting any output from treeio->write_tree. Dumper shows that the tree is populated.
Jim
use Data::Dumper;
use Bio::TreeIO;
my $treeio = new Bio::TreeIO(-file => "PF03466_seed.nhx.txt",
-format => "newick");
while( my $tree = $treeio->next_tree ) {
$treeio->write_tree($tree);
print Dumper($tree);
}
=====================================
Jim Hu
Associate Professor
Dept. of Biochemistry and Biophysics
2128 TAMU
Texas A&M Univ.
College Station, TX 77843-2128
979-862-4054
More information about the Bioperl-l
mailing list