[Bioperl-l] DNAStatistics

[Dave Messina]

Hi Sarah,

Usually "unintialized value" errors mean you're not trying to read from an empty variable.

I would check that all of the data you're passing to calc_KaKs_pair does contain a value.


> My alignment object has gaps, but I believe this module handles gaps.

I'm not sure about that; I'd have to check. Did you try handing it some ungapped data to see if the errors go away?



Dave