Dear All, Which (BioPerl or other) module/algorithm would you recommend for predicting cis-regulatory elements (mainly TFBSs) in a variety of organisms? We (= 1 colleague and I) have looked at http://www.nature.com/nbt/journal/v23/n1/full/nbt1053.html so far. Thanks, Illes -- http://hal.elte.hu/fij