[Bioperl-l] hmmer3/hmmscan parser

[Kai Blin]

On Mon, 2010-05-24 at 17:46 -0700, Thomas Sharpton wrote:

> To clarify, I have constructed a SearchIO parser for hmmer3 hmmscan and
> hmmsearch output. It appears to be fully functional and I have had a handful
> of users test and integrate this module.

That's pretty much what I need. Thanks to the folks on IRC, I got
pointed at the correct repository yesterday evening.

> Kai, I can mail an archive of the parser your way if you're in a hurry. With
> some assistance from Chris et. al., I expect the code to be in the github
> repo by the day's end.

No worries, that's fine. I've got a checkout of the standalone
repository that I can play with now. Is there any particular reason you
decided to create a new parser instead of integrating the code into the
existing hmmer.pm module? I haven't looked at how the hmmer2 hmmsearch
output looks compared to the hmmer3 version and if there's any
conflicts.

Cheers,
Kai

PS: Tom, sorry for the repost, forgot to CC the list. Pre-coffee email sending, it never works.

-- 
Dipl.-Inform. Kai Blin         kai.blin at biotech.uni-tuebingen.de
Interfakultäres Institut für Mikrobiologie und Infektionsmedizin
Abteilung Mikrobiologie/Biotechnologie
Eberhard-Karls-Universität Tübingen
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