[Bioperl-l] Pfam database

[Dave Messina]

Hi,

The release notes for the latest Pfam (24.0) do mention file format changes, but I could not find documentation describing those changes.

Your questions relating to that would best be answered by the people at Pfam. You can contact them here:

pfam-help at sanger.ac.uk


However, please do report back to us what you learn. It's quite likely our code is not compatible with Pfam 24.0, and we would need that information to fix it.


Thanks,
Dave




On May 23, 2010, at 5:57 PM, NamNAme wrote:

> 
> Dear all,
> A few weeks  ago I wrote a program that need the pfam database, and I tested
> it on the first version of pfam where each protein family sequences are in
> one file.
> But now I would like to test it on the last version of pfam but  the
> organization changed.
> I've found a file called Pfam-A.fasta which contains sequences and the
> family they belong to. But the sequences inside are not complete.
> So, I've two questions : Why these sequences are not complete ?
> And, How can I find a file with complete sequences and the family they
> belong to ?
> Thank you for your help.
> Bye.
> P-S : There is the file pfamseq, I tried to make a script to read it and
> then retreive the database structure i want but, this file is enourmous and 
> use too much memory so it crashed. 
> -- 
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> 
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