[Bioperl-l] storing/retrieving a large hash on file system?
Ben Bimber
bimber at wisc.edu
Tue May 18 15:28:06 UTC 2010
this question is more of a general perl one than bioperl specific, so
I hope it is appropriate for this list:
I am writing code that has two steps. the first generates a large,
complex hash describing mutations. it takes a fair amount of time to
run this step. the second step uses this data to perform downstream
calculations. for the purposes of writing/debugging this downstream
code, it would save me a lot of time if i could run the first step
once, then store this hash in something like the file system. this
way I could quickly load it, when debugging the downstream code
without waiting for the hash to be recreated.
is there a 'best practice' way to do something like this? I could
save a tab-delimited file, which is human readable, but does not
represent the structure of the hash, so I would need code to re-parse
it. I assume I could probably do something along the lines of dumping
a JSON string, then read/decode it. this is easy, but not so
human-readable. is there another option i'm not thinking of? what do
others do in this sort of situation?
thanks in advance.
-Ben
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