[Bioperl-l] branch pruning v.2

Robert Buels rmb32 at cornell.edu
Tue May 18 00:15:13 UTC 2010


OK, implemented as proposed.  How-to for resurrecting archived branches 
is on the wiki at http://www.bioperl.org/wiki/Using_Git#Archived_Branches

Rob


Chris Fields wrote:
> On May 14, 2010, at 6:01 PM, Robert Buels wrote:
> 
>> Chris Fields wrote:
>>> On a related note, going through, it appears the git conversion didn't track merges back to trunk.  For instance, I know the featann_rollback was merged to trunk but it's not showing up.  I know svn had poor merge-tracking prior to 1.5 (where svn:mergeinfo came into play), so it may be hard to actually find true merges w/o that.
>> OK, here are all our current branches, I will go through them in order of last-modified date.
>>
>> 1998-12-11  bioperl
>> 1999-02-19  release-0-04-bug
>> 1999-04-13  bioperl-live
>> 1999-04-13  stable-0-05
>> 2000-01-27  branch-ensembl-m1
>> 2000-02-07  internal-branch-pre-delete-06-tag
>> 2000-03-22  stable-0-05-new
>> 2001-02-19  branch-06
>> 2001-11-14  branch-07-ensembl-120
>> 2001-12-28  steve_chervitz
>> 2002-01-16  branch-07
>> 2002-10-22  branch-1-0-0
>> 2003-07-07  branch-1-2-collection
>> 2003-10-13  branch-1-2
>> 2004-10-20  ontology-cache
>> 2005-04-14  branch-1-4
>> 2006-01-11  bioperl-branch-1-5-1
>> 2006-08-14  branch-experimental
>> 2007-02-14  branch-1-5-2
>> 2007-08-28  featann_rollback
>> 2007-11-07  lightweight_feature_branch
>>
>> Proposal: move the above to refs/archive and not worry any further about them.  Maybe we can throw them out in 2020.
> 
> Just as long as we know they are there.  Rob, can you document the archive set up on the wiki so we don't forget it?
> 
> I deleted the featann_rollback branch.  That was a feature branch (no pun intended) to rollback overloading and a host of other changes introduced to bioperl just before the 1.5 release.  It was merged a few years ago in svn.
> 
>> 2009-06-17  restriction-refactor
>>
>> Proposal: delete, looks like it was merged in a2cb40e6c9c7da4f776dbb72a0266f54320fa37f
> 
> This may have been Mark's refactoring, so yes, delete.
> 
>> 2009-08-13  TRY_gff_refactor
>>  proposal: delete, git claims it is merged
>>
>> 2009-08-13  TRY_locatableseq_refactor
>>  proposal: delete, git claims it is merged
> 
> I deleted these.  The primary goal of TRY_gff_refactor was to work in GFF3 work, but that may rely on FeatureIO so will have to be done in stages.  At some point, if we do a larger scale refactoring of GFF for GFF3 compat we can make another branch.  TRY_locatableseq_refactor will be obsoleted once GSoC starts.  
> 
>> 2009-09-29  branch-1-6
>>  keep, 1.6 maint branch i think.
> 
> Yes.  I will probably work on another set of merges from to 1.6 soon to bring it up to speed, maybe for one last 1.6 release.
> 
>> 2009-10-14  anydbm-branch
>>  keep, MAJ working.  MAJ, maybe you should move this to topic/ ?
>>
>> 2010-01-31  TRY_featureio_refactor
>>  keep, but looks dead.  cjfields, maybe you want to delete it?
> 
> Yes.  I've deleted this, as FeatureIO is on it's own. 
> 
>> 2010-05-12  topic/bug_3077
>>  delete, git claims it is merged.
> 
> That's already deleted.  Maybe needs to be pruned locally?
> 
>> Please review, and I'll do the work if people agree.
>>
>> Rob
> 
> Good start!
> 
> chris
> 
> 




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