[Bioperl-l] RemoteBlast

Katz joshpk105 at gmail.com
Thu May 13 14:42:28 UTC 2010


Is there anyway to differentiate between the three different ncbi
blastn? Right now I'm using RemoteBlast as follows:
Bio::Tools::Run::RemoteBlast->new(-prog => 'blastn', -data => 'nr', -
expect => '1e-5', -readmethod => 'SearchIO');
then blasting my files. However, this is auto using megablastn and i
need to use regular blastn.

Thx,
Josh



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