[Bioperl-l] Bio::Align - alignment by position?

[Jun Yin]

Hi, 

When you use $aln->slice(), there is a third optional parameter to keep
gap-only columns in newly created slice, e.g.

$aln2=$aln->slice(20,30,1);

By defining the third parameter, you can keep gap-only sub sequences.

Cheers,
Jun Yin
Ph.D. student in U.C.D.

Bioinformatics Laboratory
Conway Institute
University College Dublin



 

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