[Bioperl-l] New Bioperl dependency? Sort::Naturally

[Chris Fields]

To tell the truth, I'm more worried about getting data from various formats into Bio::* objects than getting the output 100% correct and identical to the original input.  None of the SeqIO module make that specific promise, simply b/c it's a nearly impossible thing to maintain, with very little payback.  Round-tripping is fine and all, just not our first priority.

chris

On May 8, 2010, at 6:34 AM, Florent Angly wrote:

> Same question about the CPAN module Test::Files (http://search.cpan.org/~philcrow/Test-Files-0.14/Files.pm <http://search.cpan.org/%7Ephilcrow/Test-Files-0.14/Files.pm>). I could see myself using it in the BioPerl unit tests to make sure that the assembly files written match the input assembly files.
> 
> It looks like the Bio::SeqIO modules tests could use it as well.
> 
> Cheers,
> 
> Florent
> 
> 
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