[Bioperl-l] Mapping Entrez Gene ID to Ensembl Gene ID

Ram Podicheti mnrusimh at gmail.com
Tue May 4 00:42:49 UTC 2010

Thanks Sean, that definitely helped.


Sean Davis wrote:
> On Mon, May 3, 2010 at 6:42 PM, Ram Podicheti <mnrusimh at gmail.com
> <mailto:mnrusimh at gmail.com>> wrote:
>     Is there a way to obtain the Ensembl Gene ID from an Entrez Gene
>     ID? In
>     other words, I am hoping to get 'ENSMUSG00000029372' as the output
>     when
>     I supply 57349.
> Check out the Biomart interface to Ensembl.  You can supply any type
> of ID as a filter and get back gene information, including the ID,
> that map to that ID.  I believe there is a perl interface to biomart,
> but I haven't used it to comment directly.  There is also an
> R/Bioconductor interface.  
> Sean

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