[Bioperl-l] [Gmod-schema] bp_genbank2gff3.pl in bioperl-live: why map CDS to gene_component_region?

[Leighton Pritchard]

Hi,

Nathan's been in touch to ask exactly what the command-line was that I was
using, and this was missing from the thread so, for info:

bp_genbank2gff3.pl --noCDS NC_000913.gbk

And 

bp_genbank2gff3.pl --CDS NC_000913.gbk

With occasional absolute paths to the input sequence.

L.


On 23/03/2010 Tuesday, March 23, 18:18, "Scott Cain" <scott at scottcain.net>
wrote:

> Hi Leighton,
> 
> I wonder if this is a change stemming from Nathan's work on this
> script.  Nathan?
> 
> Scott
>

-- 
Dr Leighton Pritchard MRSC
D131, Plant Pathology Programme, SCRI
Errol Road, Invergowrie, Perth and Kinross, Scotland, DD2 5DA
e:lpritc at scri.ac.uk       w:http://www.scri.ac.uk/staff/leightonpritchard
gpg/pgp: 0xFEFC205C       tel:+44(0)1382 562731 x2405


______________________________________________________
SCRI, Invergowrie, Dundee, DD2 5DA.  
The Scottish Crop Research Institute is a charitable company limited by guarantee. 
Registered in Scotland No: SC 29367.
Recognised by the Inland Revenue as a Scottish Charity No: SC 006662.


DISCLAIMER:

This email is from the Scottish Crop Research Institute, but the views expressed by the sender are not necessarily the views of SCRI and its subsidiaries.  This email and any files transmitted with it are confidential to the intended recipient at the e-mail address to which it has been addressed.  It may not be disclosed or used by any other than that
addressee.
If you are not the intended recipient you are requested to preserve this confidentiality and you must not use, disclose, copy, print or rely on this e-mail in any way. Please notify postmaster at scri.ac.uk quoting the name of the sender and delete the email from your system.

Although SCRI has taken reasonable precautions to ensure no viruses are present in this email, neither the Institute nor the sender accepts any responsibility for any viruses, and it is your responsibility to scan the email and the attachments (if any).
______________________________________________________