[Bioperl-l] load_seqdatabase.pl

Krzysztof Sarapata mysarapa at cyf-kr.edu.pl
Tue Feb 16 17:03:25 UTC 2010


Hi



I've loaded GenBank file into bioSQL structure with "load_seqdatabase.pl" script. 

Is it correct that each entity (qualifier) from FEATURES even "db_xref"  e.g.

 

FEATURES             Location/Qualifiers

     source          1..257719

                     /organism="Homo sapiens"

                     /mol_type="genomic DNA"

                     /db_xref="taxon:9606"

                     /chromosome="1"

                     .....

                    /db_xref="GeneID:100287102"

 

is put into  "Seqfeature Qualifier Value" table, if we have exactly table "Dbxref"?

Why value of this qualifier (db_xref) isn't put into "Dbxref" table?



With regards

Krzysztof Sarapata




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