[Bioperl-l] display sequence alignment

[Albert Vilella]

I am actually also interested in this :-)

My requirements are to be able to define an image size, like 1200x800
pixels, and then have a representation of the alignment produced
through a script, with the clustalw or nucleotide colour palette like
in Jalview.

Anyone?

On Tue, Feb 16, 2010 at 2:26 PM, Jessica Sun <jessica.sun at gmail.com> wrote:
> Do any one know how to display protein/peptide alignments in color using
> bioperl.
>
> thx
>
> On Mon, Feb 15, 2010 at 9:35 AM, Jessica Sun <jessica.sun at gmail.com> wrote:
>
>>
>>
>> ---------- Forwarded message ----------
>> From: Jessica Sun <jessica.sun at gmail.com>
>> Date: Fri, Feb 12, 2010 at 8:44 PM
>> Subject: one more question
>> To: bioperl-l at lists.open-bio.org
>>
>>
>> Does anyone knows how to get genomic(dna) sequences(with right sub regions)
>> in gbk format when you only have NM_(mRNA) accession numbers.
>>
>> Thanks,
>>
>>
>> --
>> Jessica Jingping Sun
>>
>>
>>
>> --
>> Jessica Jingping Sun
>>
>
>
>
> --
> Jessica Jingping Sun
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