[Bioperl-l] sim4 parsing module

[Chris Fields]

On Dec 21, 2010, at 3:40 PM, Jeff S Kittrell wrote:

> The sim4 module does not properly parse sim4cc output. I was told by the sim4cc developers its output is the same as sim4. I dont know if someone on this could help me with fixing this issue? I can provide examples/output files where it does and does not work. I don't the have requisite PERL knowledge to fix it myself. Thanks for any help 
> 
> Jeff Kittrell

Jeff, yes we would need to see example code.  It might be a good idea to submit this as a bug, with the examples and a script.

http://bugzilla.open-bio.org/

chris