[Bioperl-l] Bio::Index::GenBank - by organism?

[Jay Hannah]

On Nov 10, 2009, at 12:50 PM, Jason Stajich wrote:
> You might also look at what mygenbank does:
> http://homepage.mac.com/iankorf/mygenbank.html

It appears, perhaps, that BioSQL can provide *foo* searching like so:

http://www.biosql.org/wiki/Schema_Overview#TAXON.2C_TAXON_NAME

 SELECT DISTINCT include.ncbi_taxon_id FROM taxon
    INNER JOIN taxon AS include ON
      (include.left_value BETWEEN taxon.left_value
        AND taxon.right_value)
 WHERE taxon.taxon_id IN
   (SELECT taxon_id FROM taxon_name
    WHERE name LIKE '%fungi%')

So I think we're going to chase that for a while.

I didn't see a *foo* search in MyGenBank?

Thanks,

j
http://clab.ist.unomaha.edu/CLAB/index.php/User:Jhannah