[Bioperl-l] RemoteBlast filter option

[Smithies, Russell]

Filters for masking the query sequence.
L = low complexity, R = repeats, m = masking.
A good explanation here:
http://www.ncbi.nlm.nih.gov/staff/tao/URLAPI/new/node80.html



--Russell

> -----Original Message-----
> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-
> bounces at lists.open-bio.org] On Behalf Of Xiang, Philip
> Sent: Wednesday, 18 March 2009 12:54 p.m.
> To: bioperl-l at lists.open-bio.org
> Subject: [Bioperl-l] RemoteBlast filter option
> 
> Does anyone know what the RemoteBlast FILTER options stand for?
> 
> 
> 
> http://doc.bioperl.org/releases/bioperl-current/bioperl-live/
> 
> 
> 
> %PUTPARAMS = (
> 
> ...
> 
>             'FILTER'          => '[LRm]',                              #
> L or R or m
> 
> ...
> 
> }
> 
> 
> 
>        Phil Xiang
> 
> 
> 
> 
> 
> 
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> Bioperl-l at lists.open-bio.org
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