[Bioperl-l] Extraction of exon, intron, promoter, UTR

[Chris Fields]

On Mar 13, 2009, at 2:02 PM, Dave Messina wrote:

> Hmm, I bet the Gene Table info can be retrieved via EUtilities, for  
> which
> there is a BioPerl module.
> Can Chris or someone more familiar with EUtilities confim that?
>
>
>
> Dave

This can be done via EUtilities, but the data can be retrieved via  
Bio::DB::EntrezGene as a Bio::Seq.  See this HOWTO:

http://www.bioperl.org/wiki/HOWTO:Getting_Genomic_Sequences

chris