[Bioperl-l] Next-gen modules

John Marshall john.marshall at sanger.ac.uk
Wed Jun 17 13:28:12 UTC 2009


On 17 Jun 2009, at 12:29, Elia Stupka wrote:
> Similarly, there seems to be little in bioperl-run to support tools  
> that have been developed in this area, such as Maq, BowTie, TopHat,  
> etc?

FYI I have a Bio::Tools::Run::Velvet wrapper [1] that I plan to submit  
in the not too distant future.  (First it needs some "blah blah"  
replaced with actual documentation and a test suite.)

Cheers,

     John

[1] http://www.ebi.ac.uk/~zerbino/velvet/


-- 
 The Wellcome Trust Sanger Institute is operated by Genome Research 
 Limited, a charity registered in England with number 1021457 and a 
 company registered in England with number 2742969, whose registered 
 office is 215 Euston Road, London, NW1 2BE. 



More information about the Bioperl-l mailing list