[Bioperl-l] Bio::Moose is now....

Robert Buels rmb32 at cornell.edu
Fri Jul 31 14:53:08 UTC 2009

I think this sounds great.  GREAT news about the Biome::PrimarySeq 


Chris Fields wrote:
> Biome!  This makes the most sense to me; as Mark points out the name 
> works as an appropriate acronym (BioPerl with Metaclass Extensions), as 
> well as a biome being (per wikipedia):
> "a climatically and geographically defined areas of ecologically similar 
> climatic conditions such as communities of plants, animals, and soil 
> organisms ... often referred to as ecosystems".
> Seems a fitting name for a open-source project.  I'll be moving the 
> namespace over to Biome over the next couple of days on github.  Now I 
> owe Mark some beer...
> Now, for extensions, should I assume this will eventually be BioPerl2 
> (and thus use BioX::*)?  Or stick with BiomeX::*?
> chris
> PS: Just a quick benchmark for the current Bio::Moose::PrimarySeq 
> implementation (we don't have SeqIO working as of yet, so the benchmark 
> script does the heavy lifting):
> http://gist.github.com/158317
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Robert Buels
Bioinformatics Analyst, Sol Genomics Network
Boyce Thompson Institute for Plant Research
Tower Rd
Ithaca, NY  14853
Tel: 503-889-8539
rmb32 at cornell.edu

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