[Bioperl-l] Syntax for load_interpro.pl?

Hilmar Lapp hlapp at gmx.net
Sun Jul 5 22:00:42 UTC 2009

Hi John,

I presume you mean the scripts/biosql/load_interpro.pl script in  
Bioperl-db. It has indeed been obsoleted for a long time and I guess I  
should remove it because the functionality is now in load_ontology.pl.  
This is b/c InterPro for the purposes of BioPerl is an ontology.

Have you found it not to work with load_ontology.pl?


On Jul 5, 2009, at 4:30 PM, John LaCava wrote:

> Greetings,
> I am attempting to use this script, but I don't seem to be able to  
> determine the appropriate syntax.
> Documentation on this script seems minimal.  Moreover, I am not yet  
> terribly experienced with
> these endeavors.
> Could someone possibly provide me with an example syntax?
> e.g. > load_interpro.pl ...
> then what?
> I must specify -db -file -version ?
> I tried a couple of ways, but I get the similar errors each time:
> e.g.
> /usr/local/bin/bp_load_interpro.pl: line 29: syntax error near  
> unexpected token `$file,'
> /usr/local/bin/bp_load_interpro.pl: line 29: `my ($file, $version);'
> Also, from reading the comments, it appears this is supposed to be  
> made obsolete or superseded by
> the script load_ontologies.pl.  Why is this?
> Sorry to bother, and thanks in advance.
> John
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> BioSQL-l at lists.open-bio.org
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: Hilmar Lapp  -:-  Durham, NC  -:-  hlapp at gmx dot net :

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