[Bioperl-l] truncating a sequence and remapping annotations

[Robert Buels]

Looks like bug 1572 is related to this: 
http://bugzilla.open-bio.org/show_bug.cgi?id=1572

Rob

Robert Buels wrote:
> Hi all,
> 
> Recently a user came into #bioperl looking to truncate an annotated 
> sequence (leaving the region between e.g. 150 to 250 nt), and have the 
> annotations from the original sequence be remapped onto the new 
> truncated sequence.
> 
> Poking through code, I came across an undocumented function trunc() that 
> from the comments looks like it was written by Jason as part of a master 
> plan to implement this very functionality.
> 
> Just wondering, what's the status of that?
> 
> Rob
> 


-- 
Robert Buels
Bioinformatics Analyst, Sol Genomics Network
Boyce Thompson Institute for Plant Research
Tower Rd
Ithaca, NY  14853
Tel: 503-889-8539
rmb32 at cornell.edu
http://www.sgn.cornell.edu