[Bioperl-l] AlignIO error with aligments containing an all-gap sequence

[Dave Messina]

>
> I know that it is possible to have an all-gap LocatableSeq


You can, but to avoid the "can't guess alphabet" error I'm getting you have
to set the alphabet manually (which AlignIO does not).


I'll start a branch to get the process started.


Terrific!

In the meantime, then, I'll just use the -nowarnonempty workaround in
my local copy of AlignIO.


Dave