[Bioperl-l] Access GSS sequences using Bio::DB::GenBank

[Robert Buels]

I think you're looking for the -db => 'nucgss' option.

I'll add a better listing of this (undocumented) options to the 
Bio::DB::Query::GenBank docs.

Rob

-- 
Robert Buels
Bioinformatics Analyst, Sol Genomics Network
Boyce Thompson Institute for Plant Research
Tower Rd
Ithaca, NY  14853
Tel: 503-889-8539
rmb32 at cornell.edu
http://www.sgn.cornell.edu

michael watson (IAH-C) wrote:
> Hi
> 
> I want to download GSS sequences using Bio::DB::GenBank.
> 
> When I specify db => 'nucleotide', it gets the 3000 or so that Entrez reports are in nucleotide, but there are another ~30000 in GSS that I want, but when I try db => 'GSS' or db => 'gss' nothing comes down.
> 
> I'm using bioperl 1.5.1.
> 
> Any clues?
> 
> Mick
> 
> 
> 
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