[Bioperl-l] Problems with Bioperl-ext package on WinVista?

[Yee Man Chan]

I believe this warnings should have been fixed with the latest Bio/Tools/HMM.pm. Are you sure you are using the lastest Bio/Tools/HMM.pm? I noticed that there are two pairs of "use strict" and "use warnings" in this version. :P

Yee Man

--- On Mon, 8/17/09, Chris Fields <cjfields at illinois.edu> wrote:

> From: Chris Fields <cjfields at illinois.edu>
> Subject: Re: [Bioperl-l] Problems with Bioperl-ext package on WinVista?
> To: "Robert Buels" <rmb32 at cornell.edu>
> Cc: "BioPerl List" <bioperl-l at lists.open-bio.org>, "Yee Man Chan" <ymc at yahoo.com>
> Date: Monday, August 17, 2009, 2:22 PM
> Still seeing that odd warning popping
> up:
> 
> cjfields4:Bio-Tools-HMM cjfields$ ./Build test --verbose
> t/001_basics.t .. Argument "FL" isn't numeric in numeric lt
> (<) at
> /Users/cjfields/bioperl/Bio-Tools-HMM/blib/lib/Bio/Tools/HMM.pm
> line 185.
> 
> Have you tried using Yee Man's original Makefile.PL to see
> if it works better?  There appear to be some
> differences in the compilation, including a linking warning
> popping up.
> 
> chris
> 
> On Aug 17, 2009, at 3:32 PM, Robert Buels wrote:
> 
> > OK, I split Bio::Tools::HMM and Bio::Ext::HMM off into
> a new distro at Bio-Tools-HMM in the repo.  The tests
> are not passing, I think that some bugs need to be fixed in
> the logic of things.
> > 
> > Yee Man, could you have a look?  To download the
> newly repackaged code:
> > 
> > svn co svn+ssh://your_login@dev.open-bio.org/home/svn-repositories/bioperl/Bio-Tools-HMM/trunk
> Bio-Tools-HMM
> > 
> > perl Build.PL; ./Build test
> > 
> > Please check that things are compiling OK, check the
> test logic, upgrade the tests to use Test::More, and get the
> tests to the point where they are passing.
> > 
> > At that point, it should be ready for CPAN, but we
> need to decide how we want to coordinate that with releases
> of bioperl-live and bioperl-ext.
> > 
> > Rob
> > _______________________________________________
> > Bioperl-l mailing list
> > Bioperl-l at lists.open-bio.org
> > http://lists.open-bio.org/mailman/listinfo/bioperl-l
> 
>