[Bioperl-l] SearchIO: write/read database
Chu, Roy
RChu at coh.org
Tue May 20 07:09:56 UTC 2008
Hi,
I tried a mailing-list and module search, but I couldn't find what I was looking for--but I know it's there.
On the bioperl page (http://www.bioperl.org/wiki/HOWTO:SearchIO#Writing_and_formatting_output) it says:
"If your data is instead stored in a database you could build the Bio::Search objects up in memory directly from your database and then use the Writer object to output the data."
I want to write/read BLAST results to a database w/o having to write to files or parse any xml. Can someone direct me to any available module(s) that will help me in my endeavor?
Thanks in advance,
Roy
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