[Bioperl-l] Very basic implementation of GenBank XML SeqIO module

Chris Fields cjfields at uiuc.edu
Mon Mar 31 20:05:51 UTC 2008


You can submit it either to me directly or to bugzilla (start a new  
bug report as an enhancement request, then attach the relevant files).

Does it have a test suite available?  If not, you should try setting  
one up:

http://www.bioperl.org/wiki/HOWTO:Writing_BioPerl_Tests

chris

On Mar 31, 2008, at 2:31 PM, Ryan Golhar wrote:

> I have a (very) basic SAX implementation of a SeqIO module to parse  
> GenBank XML records.  Right now, it only reads in basic information  
> regarding the sequence and the sequence itself.
>
> It does not yet parse the features table.  Should I submit it to be  
> included in bioperl or wait until I implement more for the features  
> table?  I'm not sure when I'll get around to it though
>
> Ryan
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