[Bioperl-l] time-consuming bp_load_seqdatabase.pl

stephan.rosecker stephan.rosecker at ish.de
Tue Mar 11 11:08:08 UTC 2008


Dear list,

I have started the "bp_load_seqdatabase.pl" script from the "bioperl-db-1.5.2_100" 
package with the unigene
"Hs.data". It runs on a 7 processot machine with 15GB ram. The DBMS is postgres on a 
similar machine.
BioSQL core schema is v1.0.0..

The job runs since friday.

./bp_load_seqdatabase.pl --host foo --port 5435 --dbname bioseqdb --dbuser foo --dbpass 
bar --driver Pg --format ClusterIO::unigene ../ncbi/Hs.data

Is it normal that it takes so long?
What are your experiences?

best regards
stephan



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