[Bioperl-l] Reciprocal blast

[Amir Karger]

<plug>
There's a cut & paste protocol for Reciprocal best hit blast at

http://sysbio.harvard.edu/csb/resources/computational/scriptome/UNIX/Pro
tocols/Sequences.html

Let me know if you need to tweak things.
</plug>

-Amir Karger 

> -----Original Message-----
> From: Matt [mailto:matthewehodges at gmail.com] 
> Sent: Friday, March 07, 2008 11:17 AM
> To: bioperl-l at bioperl.org
> Subject: [Bioperl-l] Reciprocal blast
> 
> Dear experts,
> 
> I want to do a best reciprocal blastp of a fasta protein 
> dataset against the 
> protein models of various species also in fasta format. The 
> aim is o have an 
> output showing presence/not presence. I think this is 
> possible to do using 
> perl, but i'm very much a beginner so any help in this would 
> be greatly 
> appreciated.
> Thanks
> Matt
> 
> 
>