[Bioperl-l] GenBank updated sequence not being retrieved
Ryan Golhar
golharam at umdnj.edu
Thu Jan 24 21:17:14 UTC 2008
I'm using Bioperl 1.4 (and tried with 1.5.1).
I'm trying to download GenBank sequence for which I have accession #'s.
One of the sequences has been replaced with a newer version. I'm
using get_Seq_by_acc, which returns the warning:
-------------------- WARNING ---------------------
MSG: acc (gb|XM_087386) does not exist
---------------------------------------------------
If I check NCBI's website for the sequence, it has indeed been replaced
by an NM_ sequence. How can I get BioPerl to retrieve the latest
version of a sequence?
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