[Bioperl-l] Bio::Assembly::IO problems

[Smithies, Russell]

Is the Bio::Assembly::IO stuff working?
I want to parse some .ace files but keep getting errors:

	[smithiesr at impala ace_phrap]$ perl 454_read_ace.pl
	Can't call method "get_consensus_sequence" on an undefined value at /usr/lib/perl5/site_perl/5.8.8/Bio/Assembly/IO/ace.pm line 169, <GEN0> line 20.

My code is:

	#!perl -w

	use Bio::Assembly::IO;
	use Data::Dumper;

	my $in = "454Contigs.ace";

	$io = new Bio::Assembly::IO(-file=>$in,-format=>"ace");
	$ass = $io->next_assembly;

	print Dumper $ass;
	exit;

any ideas?

Thanx,

Russell Smithies 

Bioinformatics Software Developer 
T +64 3 489 9085 
E  russell.smithies at agresearch.co.nz 

Invermay  Research Centre 
Puddle Alley, 
Mosgiel, 
New Zealand 
T  +64 3 489 3809   
F  +64 3 489 9174  
www.agresearch.co.nz 


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